PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509845.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 190aa    MW: 22413.8 Da    PI: 4.7767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000113557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_016509845.1 35 YECNFCKRGFTNAQALGGHMNIH 57
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-53361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.96E-73362No hitNo description
PROSITE profilePS5015711.2613562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MASEKNNNYS DSSSEDNDRE SEKFNDDNTG IGRSYECNFC KRGFTNAQAL GGHMNIHRKD  60
KLKAKQNSNQ ESSSIYSRKS QDQANAFDSS RYYAPISSHE QHHYYSRAQM NYQFYYQHPN  120
PSYQHVHDSR PMQENYNYFG MHDNYYDTNL SLRIEPTLID DEEEEEEGKK DVDVDENELD  180
LELRLGYNNH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781958.11e-140PREDICTED: transcriptional regulator TAC1-like
RefseqXP_016509845.11e-140PREDICTED: transcriptional regulator TAC1-like
TrEMBLM1DE902e-70M1DE90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000876467e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-15C2H2 family protein